In a recent MacMost Newsletter, I came across the following handy trick in Mac OS X: while the cursor is over a word (not necessarily selected), one can press command-control-d to open dictionary which pops up a little window with the word's definition. This works in Safari and Mail, but not in Preview (unfortunately).
Previously, when I need to check the definition of a word, I right-click on it and then follow the link "Look Up in Dictionary". This will launch or pop up Dictionary with detailed information about the word (Dictionary/Thesaurus/wikipedia).
The right-click method seems to integrate better with other Mac OS X applications. For example, it works with Preview as well. However, now that I know it, I sometimes prefer the command-control-d approach better; it is quick and non-obstructive.
Sunday, January 9, 2011
IUPAC nucleotide symbols and their complements
Recently, I was interested in knowing the complements of all the IUPAC nucleotide symbols. As blogged previously, I am quite familiar with the "meaning of nucleotide IUPAC codes" (namely A/C/G/T, and R/Y/N etc). However, when I first check the Gene Infinity website on nucleotide symbols, it still puzzled me for awhile to figure out the meaning of the DNA alphabet (with complements), as except below:
After thinking it for a bit, things begin to become clear. They are based on the complementarity of Watson-Crick base-pairs (A–T and G–C) and the meaning of each degenerated IUPAC nucleotide symbol. For example,
A C G T M R W S Y K B D H V N | | | | | | | | | | | | | | | T G C A K Y W S R M V H D B NFor example, some degenerated IUPAC symbols are complemented to themselves (e.g., W–W and S–S), while others are seemingly "hard" to apprehend (e.g., B–V and D–H).
After thinking it for a bit, things begin to become clear. They are based on the complementarity of Watson-Crick base-pairs (A–T and G–C) and the meaning of each degenerated IUPAC nucleotide symbol. For example,
- W represents A/T, meaning weak (with only two hydrogen-bonds). The complements of A/T are T/A respectively, which is W again.
- B (not A) represents C/G/T, and their complements are G/C/A respectively, which is V (not U/T).
It is easy to verify that all other complementary pairs follow exactly the same basic principle.
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